Quality assessment & filtering
User manual
FASTX-Toolkit - Command Line Usage
NGS practical session 1: Basic NGS read data handling and quality control
REVERSE: A user-friendly web server for analyzing next-generation sequencing data from in vitro selection/evolution experiments | bioRxiv
SOPs/qc_shortReads – BaRC Wiki
Ultrafast one‐pass FASTQ data preprocessing, quality control, and deduplication using fastp - Chen - 2023 - iMeta - Wiley Online Library
Copyright 2013 Regents of the University of Minnesota
Improved PCR-Based Detection of Soil Transmitted Helminth Infections Using a Next-Generation Sequencing Approach to Assay Design | PLOS Neglected Tropical Diseases
Gigabyte
Introduction to Galaxy and RNA-Seq | PPT
Read QC and trimming
Daniel Blankenberg
Galaxy
Running FastQC in Galaxy - YouTube
GitHub - ivars-silamikelis/fastq_qual_trimmer
D3: Computational Biology & Applied Algorithmics: Software
Quality Control and Preprocessing of Sequencing Reads
D3: Computational Biology & Applied Algorithmics: Software
GitHub - auerlab/fastq-trim: Lightening fast read trimmer
Read QC and trimming
FASTX-Toolkit - Galaxy Usage
Quality Control
FASTX-Toolkit - Galaxy Usage
![2FAST2Q: a general-purpose sequence search and counting program for FASTQ files [PeerJ]](https://dfzljdn9uc3pi.cloudfront.net/2022/14041/1/fig-2-full.png "2FAST2Q: a general-purpose sequence search and counting program for FASTQ files [PeerJ]")